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Division of Communicable Disease Control

CDPH Variant (Swine) Influenza Quicksheet 


Background 

Variant (swine) influenza is caused by influenza A viruses that normally circulate in pigs (but not in people). When such a virus detected in a person, it is called a “variant influenza virus.” Variant influenza virus infections are one type of novel influenza virus infection. Other influenza viruses that don’t usually circulate in people (such as avian influenza viruses), can also cause novel influenza virus infections in humans.  

​​​For information about avian influenza, see the CDPH Avian Influenza H5N1 Quicksheet​. ​​​​​

Human infections with variant influenza viruses are not common but do sporadically occur, most commonly among people who have direct or frequent contact with pigs (e.g., workers in the swine industry or children near pigs at a fair). Unlike seasonal influenza viruses, which typically circulate widely during October–May, most variant influenza virus cases identified in the United States have occurred during summer months, when seasonal influenza virus activity is low. 


Clinical Information  


Illness in humans infected with a variant influenza virus is typically mild, with symptoms like those of seasonal influenza. Like seasonal influenza, severe illness resulting in hospitalization and death is possible. People at high risk of serious complications from seasonal influenza and variant influenza include children less than 5 years, adults 65 years and older, pregnant people, and people with certain chronic medical conditions like asthma, diabetes, heart disease, and weakened immune systems. 


Variant influenza clinical guidance from CDC: 



Public Health Preparation for Annual Agricultural Events  


County, regional, and state agricultural fairs are locations where large numbers of people and pigs converge. The opportunity for transmission of variant influenza virus to people is enhanced if pigs with influenza infections are present. 

Proactive consultation with fair managers and intervention by public health officials can identify and mitigate opportunities for contact between people and ill pigs.  


Local health jurisdictions (LHJs) should be aware of upcoming agricultural fairs in their jurisdictions where pigs will be present and take the following actions, particularly if variant influenza cases have been identified in the area: 



Public Health Response to Suspect, Probable, or Confirmed Variant Influenza Virus Infections  ​

The focus of the public health response to suspected, probable, or confirmed variant influenza virus infections is case finding and identification of ill close contacts.  


Testing Criteria 

Situations of concern for variant influenza virus infections in humans that should prompt testing by a local PHL or the CDPH Viral and Rickettsial Disease Laboratory (VRDL): 


  • Reports from healthcare providers or residents in your jurisdiction of fever and respiratory symptoms in a person with recent (within 10 days of symptom onset) direct or indirect (such as attendance at an agricultural fair) pig contact. 

  • Reports of clusters of influenza A (or any influenza, if no influenza type information is available) from persons, healthcare providers, schools, camps, etc. within 10 days of a fair or other agricultural event in your jurisdiction where pigs were present. 

  • Reports of respiratory illnesses in pigs at a fair or other agricultural event that are suspected or confirmed to be influenza in the presence of known symptomatic persons; local public health officials should initiate variant influenza case finding among humans. 


Testing at a PHL is recommended for reports from clinical laboratories of influenza A positive specimens not known to be a seasonal influenza A subtype. For information on testing, see: VRDL Test Page - Novel/Avian Influenza Virus (human) PCR.       


The following information should be obtained for suspect human cases:  


  • Basic demographic information, the patient’s pig contact history, and illness severity should be provided to the COVID Control Branch and VRDL at the time the specimen is shipped to VRDL or a local PHL.  

  • Days, times, and locations of pig exposure.  

  • Knowledge of, or contact with, sick pigs.  

  • Illness symptoms. 

  • Health care received.  

  • Influenza testing results.                                                                                                                                                

Isolation 

Suspect, probable, and confirmed cases and symptomatic close contacts should be asked to voluntarily self-isolate. Suspect cases should isolate until infection with a variant virus has been excluded by a PHL or CDC. Probable and confirmed cases should follow similar precautions to seasonal influenza and isolate until any fever has been gone for 24 hours without the use of fever reducing medication and other symptoms are mild and improving. 


If the case is hospitalized, CDC recommends the same infection prevention and control recommendations as for seasonal influenza, including standard and droplet (i.e., healthcare personnel wear facemasks) precautions. For aerosol-generating procedures, a fit-tested N95 respirator or equivalent should be used by healthcare personnel. 


Although quarantine of asymptomatic contacts is not generally indicated, each situation will be evaluated in consultation with CDPH and CDC. 


Case Finding 

Case finding activities should commence if testing at a PHL indicates a person might be infected with a variant or other novel influenza virus and at a minimum, include the following:  


  • Identify close contacts (e.g., household, daycare, or healthcare setting contacts) of probable and confirmed cases of variant influenza virus infection. Close contacts are defined as persons who were within six feet of a probable or confirmed case for more than a brief period during the case’s infectious period. 

  • Monitor close contacts for fever ≥38.0° C (100.4° F) and respiratory symptoms for 10 days after their last known exposure to a probable or confirmed case. 

  • Promptly collect specimens for testing at a PHL from symptomatic close contacts whose symptom onset occurred within 10 days of last known exposure.  

  • Monitoring of close contacts may be discontinued when: 

    • Laboratory testing of appropriately collected respiratory specimens from a symptomatic close contact by RT-PCR at a PHL or CDC has excluded infection with a variant or novel virus; OR 

    • The close contact has not developed symptoms by the end of the monitoring period. 

  • The following information should be obtained for symptomatic close contacts: 

    • Basic demographic information and illness severity should be provided to the COVID Control Branch and VRDL at the time the specimen is shipped to VRDL or a local PHL. 

    • Any pig exposure. 

    • Illness symptoms. 

    • Health care received. 

    • Influenza testing results. 

  • The CDPH COVID Control Branch has a screening questionnaire available upon request. 

  • If resources allow, consider the additional case finding activities below: 

    • Alert local healthcare providers to ask about recent pig exposure among patients presenting with febrile respiratory illness. Advise providers to collect specimens from patients meeting the above criteria for influenza testing at a PHL. 

    • Work with fair organizers and local 4-H and other youth organizations that exhibit pigs to compile a list of other pig exhibitors and their contact information. Contact other pig exhibitors and assess them for fever and respiratory symptoms, either by phone or letter. Regardless of contact mechanism, the notification should include: 

      • ​A description of the situation and why it is of concern; 

      • Signs and symptoms of variant influenza; and 

      • Instructions to contact the LHJ if they develop fever ≥38.0° C (100.4° F) and respiratory symptoms within 10 days of their last known exposure  


Reporting 


  • LHJs should enter suspect, probable, or confirmed cases in CalREDIE using the "Influenza - Novel Strain" condition. 

  • Contact monitoring can be reported by uploading a list of contacts to the CalREDIE electronic file cabinet. CDPH COVID Control Branch can provide an example template upon request. 


Confirmatory Testing 

For suspected variant influenza cases with unsubtypeable influenza A virus with cycle threshold (Ct) value <35 detected at a local PHL: 

  • Report this finding immediately to VRDL by phone (510-307-8585) and the COVID Control Branch by email at: AvianInfluenza@cdph.ca.gov

  • Ship specimen to VRDL:  

    • Local PHLs should ship as much specimen as possible to VRDL for arrival on the earliest possible business day. Do NOT wait for the results of repeat testing to ship the specimen. VRDL will forward the specimen to CDC for confirmatory testing. Results of confirmatory testing will typically be available within one week. 


Contact Info​rmation  


For questions about human variant influenza during business hours:  


For questions outside of business hours:  

  • Contact the CDPH Duty Officer at (916) 328-3605 

Resources  


General information: 




For people who work with, raise, or exhibit pigs: 


Prevention: 


Figure. Public Health Response to Suspect, Probable, or Confirmed Variant Influenza Virus Infections
 

Public Health Response to Suspect, Probable, or Confirmed Variant Influenza Virus Infections

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